About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_1671045_1672231_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1671045 - 1672231
Intron Length:
1187

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TCCTATCTCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TATTTCTCATAT
Flanking Amino Acid:
SSLFIAAKLEEIYPPKLHQF
Intron Amino Acid Position:
178

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.5
1.14
0.6
94.3
17.7
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
78.8
0.65
0.8
76.4
31.8
Minor 5ss
40.3
-1.1
2.8
54
43.3
Minor BPS
51.9
0.14
1.9
74.66
41.7

Associated Gene:

Gene:
CCNE1
Ensembl Gene ID:
ENSAPLG00000013739
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014348
1668737 - 1680467
11731