About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_16718675_16721285_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16718675 - 16721285
Intron Length:
2611

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTATTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTGTCTTTATTT
Flanking Amino Acid:
MHPALLPKFMQRGLDSQT
Intron Amino Acid Position:
9

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.9
1.13
0.6
92.3
16.1
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
90.5
0.91
0.7
88.8
26.9
Minor 5ss
35
-1.7
2.7
41.8
44.8
Minor BPS
69.5
0.69
1.5
83.25
38.8

Associated Gene:

Gene:
MPHOSPH6
Ensembl Gene ID:
ENSAPLG00000018311
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028766
16715282 - 16721319
6038