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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_1673693_1673770_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1673693 - 1673770
Intron Length:
78

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTCTA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTGTCTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAAACAT
U12 Branch Point Sequence:
TTGTCTTAGACT
Flanking Amino Acid:
PTRASPLPVLGWANRDDVWK
Intron Amino Acid Position:
83

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.9
78
38.6
Major BPS
63.2
0.33
1.1
69.6
35.7
Major PPT
77.5
0.62
0.8
76.7
32
Minor 5ss
37.4
-1.4
3
42
44.5
Minor BPS
65.6
0.57
1.7
82.48
39.6

Associated Gene:

Gene:
CCNE1
Ensembl Gene ID:
ENSAPLG00000013739
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014348
1668737 - 1680467
11731