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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_1679380_1679632_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1679380 - 1679632
Intron Length:
253

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
CTGCTCCTAATG
Flanking Amino Acid:
ARKRKADVATFLQDPDEEIA
Intron Amino Acid Position:
13

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
71.5
33.9
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
91.3
0.93
0.6
88.5
21
Minor 5ss
28
-2.5
3
33.3
41.7
Minor BPS
48.5
-0.2
1.8
52.7
42.6

Associated Gene:

Gene:
CCNE1
Ensembl Gene ID:
ENSAPLG00000013739
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014348
1668737 - 1680467
11731