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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_1679724_1679829_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
1679724 - 1679829
Intron Length:
106

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTCCG
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCTTGGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTCCAG
U12 Branch Point Sequence:
GCTCCTCCAGCT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
71.4
40.3
Major BPS
41.5
-0.5
1.6
49.7
44
Major PPT
79.8
0.67
1
77.1
37.1
Minor 5ss
29.1
-2.4
2.7
33
41.9
Minor BPS
42.5
-0.4
2
59.4
43.6

Associated Gene:

Gene:
CCNE1
Ensembl Gene ID:
ENSAPLG00000013739
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014348
1668737 - 1680467
11731