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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_1680612_1681553_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1680612 - 1681553
Intron Length:
942

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCGGC
5'SS Class:
strong_major
3'SS Sequence:
GTTGTTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTACAAT
U12 Branch Point Sequence:
AATGGGTAAACA
Flanking Amino Acid:
LGVVHVAALPGTPRSSLPLT
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
70.6
41.4
Major BPS
65.2
0.38
1.3
73.4
38.5
Major PPT
83.3
0.75
0.9
77.3
37
Minor 5ss
36.7
-1.5
3.3
50.2
46.4
Minor BPS
40.4
-0.7
2.5
54.23
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013924
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044381
1680488 - 1709387
28900
ENSAPLT00000025459
1680488 - 1725727
45240
ENSAPLT00000014502
1680488 - 1723854
43367
ENSAPLT00000048277
1680488 - 1722245
41758