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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_16974302_17046590_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
16974302 - 17046590
Intron Length:
72289

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACC|GTATGTTAT
5'SS Class:
weak_major
3'SS Sequence:
TTTCCTTCCGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCCT
U12 Branch Point Sequence:
TTTTTCTTTCTT
Flanking Amino Acid:
EFTEDQPVLNLVFDDCEGNN
Intron Amino Acid Position:
25

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.9
0.33
1.3
67.9
39.7
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
84.8
0.78
0.7
80.7
24.4
Minor 5ss
49.8
-0
2.5
70.8
39.9
Minor BPS
46
-0.2
3.6
83.03
38.5

Associated Gene:

Gene:
CDH13
Ensembl Gene ID:
ENSAPLG00000002525
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002582
16974229 - 17273842
299614