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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_17046800_17075911_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17046800 - 17075911
Intron Length:
29112

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TATTTTGAAAGT
Flanking Amino Acid:
GANEKRGALKEIFKIEGNLG
Intron Amino Acid Position:
95

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.3
1.02
0.7
86.9
22.8
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
92.6
0.96
0.5
92.8
16.9
Minor 5ss
41.5
-0.9
3.1
56
48.2
Minor BPS
43.9
-0.3
2.4
67.59
44

Associated Gene:

Gene:
CDH13
Ensembl Gene ID:
ENSAPLG00000002525
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002582
16974229 - 17273842
299614