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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_17110445_17162976_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17110445 - 17162976
Intron Length:
52532

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTATACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTTTCTTTATAC
Flanking Amino Acid:
LDREAIANYELEVEVTDLSG
Intron Amino Acid Position:
185

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.8
1.03
0.7
89.6
22.7
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
88.1
0.86
0.8
84.3
29.6
Minor 5ss
32.9
-1.9
2.7
43.2
43.8
Minor BPS
67.8
0.54
1.7
79.48
35.7

Associated Gene:

Gene:
CDH13
Ensembl Gene ID:
ENSAPLG00000002525
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002582
16974229 - 17273842
299614