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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_17163122_17218064_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17163122 - 17218064
Intron Length:
54943

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTCCA
5'SS Class:
strong_major
3'SS Sequence:
ATCTTTCCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TTCTTACTAACT
Flanking Amino Acid:
VGHVMEGSPTGTTVMRMTAF
Intron Amino Acid Position:
233

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.4
1.05
0.8
80.7
33.8
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
75.6
0.58
0.7
74.3
30.2
Minor 5ss
34.5
-1.8
2.8
42.4
44.3
Minor BPS
58.4
0.34
1.9
81.5
39.9

Associated Gene:

Gene:
CDH13
Ensembl Gene ID:
ENSAPLG00000002525
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002582
16974229 - 17273842
299614