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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_17218244_17271919_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17218244 - 17271919
Intron Length:
53676

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TGTTATTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAA
U12 Branch Point Sequence:
GTTTCTTGAACC
Flanking Amino Acid:
VVSPSMLDRETMETPKYELV
Intron Amino Acid Position:
293

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.7
1.12
0.6
91.3
19.2
Major BPS
74.6
0.61
1
65.6
41.4
Major PPT
87.2
0.84
0.8
84.8
35.4
Minor 5ss
44.8
-0.6
2.8
61.1
43.8
Minor BPS
73.9
0.73
1.3
80.25
34.1

Associated Gene:

Gene:
CDH13
Ensembl Gene ID:
ENSAPLG00000002525
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002582
16974229 - 17273842
299614