Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_1731564_1733067_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1731564 - 1733067

Intron Length:

1504

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTAAGTGTG

5'SS Class:

strong_major

3'SS Sequence:

CTCTGTTTTCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTACCAT

U12 Branch Point Sequence:

ATTTGCTAGAGG

Flanking Amino Acid:

LMGGPPGIAVGGALGGLLGA

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

1.08

0.7

85.2

32.2

Major BPS

65.6

0.39

1.3

75.1

39.4

Major PPT

79.9

0.67

0.8

72.5

37.7

Minor 5ss

36.3

-1.6

3.3

48.7

47.5

Minor BPS

44.5

-0.5

2.4

56.27

45.5

Associated Gene:

Gene:

C19orf12

Ensembl Gene ID:

ENSAPLG00000019442

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026913

1705544 - 1734333

28790

ENSAPLT00000024185

1727055 - 1734333

7279