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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_17460802_17525188_F

Intron Information:

Intron Rank:
123467
Intron Class:
major
Intron Phase:
Intron Coordinates:
17460802 - 17525188
Intron Length:
64387

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTCAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCAAAA
U12 Branch Point Sequence:
GCCACCAAAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
79.3
31.1
Major BPS
48.7
-0
1
53.2
28.8
Major PPT
88.6
0.87
0.6
82
30
Minor 5ss
28.1
-2.5
2.7
31.6
42.6
Minor BPS
45.4
-0.3
2
52.7
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016584
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046673
17460178 - 17525601
65424