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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_17530199_17539439_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17530199 - 17539439
Intron Length:
9241

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGTG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTGTCTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTACAA
U12 Branch Point Sequence:
CAAACCTCATGA
Flanking Amino Acid:
LIKRVVKELQKDLPQIKAFS
Intron Amino Acid Position:
405

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
76.2
39.9
Major BPS
64.7
0.37
1
73
31.5
Major PPT
81.8
0.72
0.8
77.3
31.5
Minor 5ss
34.9
-1.7
3.5
48.2
47.9
Minor BPS
41.6
-0.6
2
46.53
42.6

Associated Gene:

Gene:
MLYCD
Ensembl Gene ID:
ENSAPLG00000021334
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028757
17528652 - 17549489
20838