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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_17539590_17540031_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17539590 - 17540031
Intron Length:
442

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGTCA
5'SS Class:
major
3'SS Sequence:
TTTCATTTCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTGTTTTCATT
Flanking Amino Acid:
LTSDISSSIQSIVKDVKLLE
Intron Amino Acid Position:
355

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1.1
62.8
38.2
Major BPS
100
1.24
0.5
100
0
Major PPT
84
0.76
0.8
76.7
37.1
Minor 5ss
35.3
-1.7
3.5
47.9
47.7
Minor BPS
56.6
0.29
1.8
78.3
39.3

Associated Gene:

Gene:
MLYCD
Ensembl Gene ID:
ENSAPLG00000021334
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028757
17528652 - 17549489
20838