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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_17540189_17541733_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
17540189 - 17541733
Intron Length:
1545

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGA|GTAAGTGCT
5'SS Class:
major
3'SS Sequence:
TTCCCTCATTGAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CCCTCAT
U12 Branch Point Sequence:
TTTTCCCTCATT
Flanking Amino Acid:
SPCEVLQKISDSEAVHPVRN
Intron Amino Acid Position:
302

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
72.5
37.3
Major BPS
70
0.5
1.1
71.2
35.2
Major PPT
57.1
0.16
1.7
69.7
35.7
Minor 5ss
36.6
-1.5
3.3
47.2
42.3
Minor BPS
64.1
0.52
2.1
88.6
36.6

Associated Gene:

Gene:
MLYCD
Ensembl Gene ID:
ENSAPLG00000021334
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028757
17528652 - 17549489
20838