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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_17625577_17626510_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
17625577 - 17626510
Intron Length:
934

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGAAAA
5'SS Class:
major
3'SS Sequence:
TTTTCCCCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTCCCCAACA
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
0.9
75.8
27.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
79.1
0.65
0.8
74.7
29
Minor 5ss
29.1
-2.4
2.8
31.7
36.1
Minor BPS
68.3
0.57
1.9
84.96
34.3

Associated Gene:

Gene:
HSBP1
Ensembl Gene ID:
ENSAPLG00000028761
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041332
17624263 - 17627570
3308