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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_17626631_17626816_R

Intron Information:

Intron Rank:
2
Intron Class:
minor
Intron Phase:
1
Intron Coordinates:
17626631 - 17626816
Intron Length:
186

Sequence Information:

Terminal Dinucleotides:
AT-AC
5'SS Sequence:
GAA|ATATCCTTT
5'SS Class:
strong_minor
3'SS Sequence:
AACGCCAGTGAAC|T
3'SS Class:
strong_BPS
U2 Branch Point Sequence:
TCCTTAA
U12 Branch Point Sequence:
TATTCCTTAACG
Flanking Amino Acid:
QTMSDQIIGRIDDMSCRIDD
Intron Amino Acid Position:
105

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
34.5
-0.9
3.4
56
43.9
Major BPS
69.7
0.49
1
59.9
38.5
Major PPT
30.3
-1.1
3
34.7
34.1
Minor 5ss
99.7
1.65
0.6
98.9
3.35
Minor BPS
88
1.05
1.1
85.03
33.7

Associated Gene:

Gene:
HSBP1
Ensembl Gene ID:
ENSAPLG00000028761
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041332
17624263 - 17627570
3308