Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_17648855_17649736_R

Intron Information:

Intron Rank:

137048

Intron Class:

major

Intron Phase:

Intron Coordinates:

17648855 - 17649736

Intron Length:

882

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTAAGTGAG

5'SS Class:

strong_major

3'SS Sequence:

GTTTCTTTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTAGAA

U12 Branch Point Sequence:

TAGGACAAAATC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.6

0.82

0.9

75.1

35.1

Major BPS

57.4

0.18

1.1

54.9

40.8

Major PPT

90.3

0.91

0.7

88.4

28.7

Minor 5ss

33.7

-1.9

3.2

40.4

Minor BPS

41.1

-0.7

49.11

41.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000021230

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025721

17641759 - 17649865

8107