Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_17654770_17725820_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

17654770 - 17725820

Intron Length:

71051

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCG|GTAAGCTGT

5'SS Class:

strong_major

3'SS Sequence:

TTTCTCTTTCTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AAACAAT

U12 Branch Point Sequence:

CCTTCCTCAGCC

Flanking Amino Acid:

EKSLKPCSQLRFPSFLVWEM

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.5

0.72

70.1

43.1

Major BPS

49.4

-0

1.3

57.1

35.8

Major PPT

87.7

0.85

0.6

81.3

30.7

Minor 5ss

46.1

-0.4

2.9

65.4

45.8

Minor BPS

56.2

0.17

1.9

66.44

45.1

Associated Gene:

Gene:

WFDC1

Ensembl Gene ID:

ENSAPLG00000013371

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021221

17654714 - 17750876

96163