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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_17661746_17676509_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17661746 - 17676509
Intron Length:
14764

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTGCGTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTTATTTAATT
Flanking Amino Acid:
MPDLRAEEDRGECSQKCYYI
Intron Amino Acid Position:
251

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.87
0.9
77.9
38.6
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
73.7
0.53
1.1
73.6
41.8
Minor 5ss
34.6
-1.7
2.7
34.2
41.4
Minor BPS
78.7
0.98
1.3
92.74
29.1

Associated Gene:

Gene:
KCNG4
Ensembl Gene ID:
ENSAPLG00000013390
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013938
17660724 - 17677565
16842