About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_17725881_17741308_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17725881 - 17741308
Intron Length:
15428

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGGTTG
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCTTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCCT
U12 Branch Point Sequence:
TTTTCCTTTTTT
Flanking Amino Acid:
ADVQLMTHFTGSCAAESGSP
Intron Amino Acid Position:
39

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
70.4
42.5
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
84.2
0.77
0.7
76.8
31.8
Minor 5ss
39.9
-1.1
3.3
47.2
48.2
Minor BPS
48.5
-0
3.6
87.87
37.8

Associated Gene:

Gene:
WFDC1
Ensembl Gene ID:
ENSAPLG00000013371
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021221
17654714 - 17750876
96163