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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_17741598_17746859_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17741598 - 17746859
Intron Length:
5262

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTGAGTAGC
5'SS Class:
major
3'SS Sequence:
TTTTCTTTGCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCCAAA
U12 Branch Point Sequence:
TTTCTTTGCAAG
Flanking Amino Acid:
LHLKMTEKYDDYEYPLHSHS
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
74.3
36.2
Major BPS
49
-0
1.3
56.7
38.7
Major PPT
73.6
0.53
1.1
75.4
38.6
Minor 5ss
33.1
-1.9
2.8
41.4
38.2
Minor BPS
43.5
-0.6
2
54.37
40.7

Associated Gene:

Gene:
WFDC1
Ensembl Gene ID:
ENSAPLG00000013371
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021221
17654714 - 17750876
96163
ENSAPLT00000013934
17725846 - 17751790
25945
ENSAPLT00000047735
17741214 - 17751790
10577