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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_17747056_17747535_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17747056 - 17747535
Intron Length:
480

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGAAAGG
5'SS Class:
major
3'SS Sequence:
ATTTCTTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
ATTTCTTTTACA
Flanking Amino Acid:
ACLESVQPPPVLDWLVQPKP
Intron Amino Acid Position:
147

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.5
0.48
1.1
59.7
45.1
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
89.6
0.89
0.7
84.2
30
Minor 5ss
30.8
-2.2
3.2
39.9
45.7
Minor BPS
73
0.72
1.5
81.53
33.1

Associated Gene:

Gene:
WFDC1
Ensembl Gene ID:
ENSAPLG00000013371
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047735
17741214 - 17751790
10577
ENSAPLT00000021221
17654714 - 17750876
96163
ENSAPLT00000013934
17725846 - 17751790
25945