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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_17749514_17750069_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17749514 - 17750069
Intron Length:
556

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTCTCATTATGT
Flanking Amino Acid:
GQCIKLRGNPDGRNLRQKYY
Intron Amino Acid Position:
222

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1.2
75
38.1
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
93.1
0.97
0.6
91.8
19
Minor 5ss
35
-1.7
2.7
41.8
44.6
Minor BPS
52.1
0.15
2.2
76.82
45.6

Associated Gene:

Gene:
WFDC1
Ensembl Gene ID:
ENSAPLG00000013371
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021221
17654714 - 17750876
96163
ENSAPLT00000013934
17725846 - 17751790
25945
ENSAPLT00000047735
17741214 - 17751790
10577