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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_17750112_17750799_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17750112 - 17750799
Intron Length:
688

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGCAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAC
U12 Branch Point Sequence:
TTTGTTTTTACA
Flanking Amino Acid:
LRQKYYKEYFGSNSNNVVGY
Intron Amino Acid Position:
236

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
79.7
35.3
Major BPS
75.8
0.64
0.9
75.6
25.3
Major PPT
92.3
0.95
0.7
87.5
30
Minor 5ss
41.2
-1
2.9
54.5
43.9
Minor BPS
60.3
0.32
1.7
74.12
37.8

Associated Gene:

Gene:
WFDC1
Ensembl Gene ID:
ENSAPLG00000013371
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047735
17741214 - 17751790
10577
ENSAPLT00000021221
17654714 - 17750876
96163
ENSAPLT00000013934
17725846 - 17751790
25945