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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_177567_177943_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
177567 - 177943
Intron Length:
377

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACAACAT
5'SS Class:
major
3'SS Sequence:
TGCATTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAAAAAT
U12 Branch Point Sequence:
TAAGCAAAAAAA
Flanking Amino Acid:
LFGCLALSTMRMKYLWTSHM
Intron Amino Acid Position:
479

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.1
65.1
40.7
Major BPS
54
0.1
1
59.7
32.6
Major PPT
80.2
0.68
0.9
77
37.1
Minor 5ss
31.9
-2.1
3.5
47.5
47.9
Minor BPS
38.9
-0.8
2.1
49.22
40.6

Associated Gene:

Gene:
DPY19L3
Ensembl Gene ID:
ENSAPLG00000012920
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031327
162016 - 195127
33112
ENSAPLT00000024410
163632 - 195127
31496
ENSAPLT00000013474
162016 - 195127
33112
ENSAPLT00000032210
156791 - 195127
38337