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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_17759625_17764638_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17759625 - 17764638
Intron Length:
5014

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGATT
5'SS Class:
strong_major
3'SS Sequence:
CTCCTTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCTTTAT
U12 Branch Point Sequence:
TCTTGCCTAACG
Flanking Amino Acid:
PLGSAEPEEESQEECELKVI
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
87.7
28
Major BPS
66.1
0.4
1.3
59.6
46.8
Major PPT
84.7
0.78
0.7
79.9
25.5
Minor 5ss
32.8
-2
3.3
47.8
47.9
Minor BPS
55.3
0.03
2.2
67.91
45.5

Associated Gene:

Gene:
ATP2C2
Ensembl Gene ID:
ENSAPLG00000012448
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013018
17759526 - 17782678
23153