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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_17767364_17768386_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17767364 - 17768386
Intron Length:
1023

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGGCGC
5'SS Class:
major
3'SS Sequence:
TTGTCTAATATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
ATTTGTCTAATA
Flanking Amino Acid:
LNKLVPPECNCLREGKLQHL
Intron Amino Acid Position:
172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1
56.6
42.5
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
71.6
0.49
0.9
66.9
38.4
Minor 5ss
25.8
-2.8
3.1
29.7
37.2
Minor BPS
52.1
0.06
2
70.03
36.7

Associated Gene:

Gene:
ATP2C2
Ensembl Gene ID:
ENSAPLG00000012448
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013018
17759526 - 17782678
23153