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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_17768496_17768572_F

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
17768496 - 17768572
Intron Length:
77

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATATA
5'SS Class:
strong_major
3'SS Sequence:
CAGTGTTAATTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TTTGTTCTAACA
Flanking Amino Acid:
RVPADLRLIEVTDLLVDESS
Intron Amino Acid Position:
209

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
89.5
23.2
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
57.1
0.16
1
56
43.4
Minor 5ss
38.7
-1.3
2.9
50.9
45.5
Minor BPS
60.1
0.31
1.7
75.11
36.7

Associated Gene:

Gene:
ATP2C2
Ensembl Gene ID:
ENSAPLG00000012448
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013018
17759526 - 17782678
23153