Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_17769448_17769682_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

17769448 - 17769682

Intron Length:

235

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTGAGTTGA

5'SS Class:

strong_major

3'SS Sequence:

TTCCCCCCACCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TGTATTTTAATC

Flanking Amino Acid:

QLTLFSFGIIGLIMLIGWLQ

Intron Amino Acid Position:

307

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.4

0.79

0.9

72.8

34.4

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

70.8

0.47

0.9

63.3

32.9

Minor 5ss

34.3

-1.8

2.8

37.6

42.2

Minor BPS

67.1

0.52

1.2

71.13

34.1

Associated Gene:

Gene:

ATP2C2

Ensembl Gene ID:

ENSAPLG00000012448

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013018

17759526 - 17782678

23153