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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_17770815_17772576_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17770815 - 17772576
Intron Length:
1762

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTGCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTCTGATTAAAA
Flanking Amino Acid:
VKKLPIVETLGCCNVICSDK
Intron Amino Acid Position:
371

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
82.5
37
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
82.5
0.73
0.8
80.5
31.5
Minor 5ss
36.7
-1.5
3.5
55.8
48.4
Minor BPS
52
0.06
2.1
69.75
42.3

Associated Gene:

Gene:
ATP2C2
Ensembl Gene ID:
ENSAPLG00000012448
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013018
17759526 - 17782678
23153