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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_17773515_17774344_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17773515 - 17774344
Intron Length:
830

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAA
U12 Branch Point Sequence:
AAAAAATAAACC
Flanking Amino Acid:
SNVSVGKLVEAGCVVNNAII
Intron Amino Acid Position:
438

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99
1.15
0.6
96.2
11.9
Major BPS
62
0.3
1
62.3
30.4
Major PPT
87.5
0.84
0.6
81.5
30.5
Minor 5ss
39.3
-1.2
2.8
50.9
45.5
Minor BPS
42.6
-0.5
2
50.55
38.8

Associated Gene:

Gene:
ATP2C2
Ensembl Gene ID:
ENSAPLG00000012448
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013018
17759526 - 17782678
23153