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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_17774435_17775531_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17774435 - 17775531
Intron Length:
1097

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATTG
5'SS Class:
strong_major
3'SS Sequence:
CACTCTACTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTATTTCACT
Flanking Amino Acid:
EGALIALAMKMELADIKDIY
Intron Amino Acid Position:
468

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.8
0.99
0.8
81.6
33.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
69.8
0.45
0.8
66.8
33.7
Minor 5ss
41.6
-0.9
3.1
55.7
48.5
Minor BPS
66.1
0.59
1.9
88.66
36.3

Associated Gene:

Gene:
ATP2C2
Ensembl Gene ID:
ENSAPLG00000012448
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013018
17759526 - 17782678
23153