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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_17775634_17776226_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17775634 - 17776226
Intron Length:
593

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGCAA
5'SS Class:
major
3'SS Sequence:
CCTTGCTTTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
CTTGCTTTAAAG
Flanking Amino Acid:
MAVKCMLKNQDQEDVYFMKG
Intron Amino Acid Position:
502

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
68.2
38.4
Major BPS
84
0.85
0.9
75
39.9
Major PPT
70.7
0.47
1
70
34.3
Minor 5ss
29.4
-2.4
3.3
37.9
46.9
Minor BPS
60.9
0.2
1.7
63.96
44.2

Associated Gene:

Gene:
ATP2C2
Ensembl Gene ID:
ENSAPLG00000012448
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013018
17759526 - 17782678
23153