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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_17776384_17777754_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17776384 - 17777754
Intron Length:
1371

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTCAGTCTT
5'SS Class:
major
3'SS Sequence:
CCTCTGTTTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAC
U12 Branch Point Sequence:
TTTTTTTTTTCT
Flanking Amino Acid:
EKRMGSSGLRVLALASGPEL
Intron Amino Acid Position:
554

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.53
1.3
72.7
44.5
Major BPS
68
0.45
0.9
67.6
25.3
Major PPT
76.6
0.6
0.8
68.5
37.3
Minor 5ss
35.1
-1.7
3
43
43.7
Minor BPS
45.5
-0.2
3.6
82.93
38.6

Associated Gene:

Gene:
ATP2C2
Ensembl Gene ID:
ENSAPLG00000012448
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013018
17759526 - 17782678
23153