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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_1777727_1777830_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1777727 - 1777830
Intron Length:
104

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGCGAT
5'SS Class:
major
3'SS Sequence:
TGTTTTCCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
GTATGTTTAATA
Flanking Amino Acid:
IYGSKFQLRAI*
Intron Amino Acid Position:
205

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1
71.2
34.5
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
86.8
0.83
0.7
81.7
30.4
Minor 5ss
34.3
-1.8
3.5
46.6
43.4
Minor BPS
60.5
0.33
1.7
68.59
38.2

Associated Gene:

Gene:
POP4
Ensembl Gene ID:
ENSAPLG00000014051
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014646
1777722 - 1780385
2664