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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_17778641_17778725_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17778641 - 17778725
Intron Length:
85

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAATGGTT
5'SS Class:
major
3'SS Sequence:
TTTTGTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
CATACAATAATG
Flanking Amino Acid:
EAELSATVTNVSIFFRTSPK
Intron Amino Acid Position:
644

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.9
0.47
1.1
71.8
37.8
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
93.6
0.98
0.7
92.3
26.6
Minor 5ss
37.7
-1.4
3.8
60
44.9
Minor BPS
45.9
-0.4
1.9
51.76
42.4

Associated Gene:

Gene:
ATP2C2
Ensembl Gene ID:
ENSAPLG00000012448
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013018
17759526 - 17782678
23153