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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_17779417_17780092_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17779417 - 17780092
Intron Length:
676

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAGGTTCA
5'SS Class:
major
3'SS Sequence:
CTCTCCCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
AGTTATTTAATA
Flanking Amino Acid:
ILVDDDFSTVMNAIEEGKGI
Intron Amino Acid Position:
716

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1.1
70.6
36.1
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
82.6
0.73
0.7
76.6
25.4
Minor 5ss
41.5
-0.9
3.1
54.2
43.3
Minor BPS
65.8
0.49
1.4
71.51
34.2

Associated Gene:

Gene:
ATP2C2
Ensembl Gene ID:
ENSAPLG00000012448
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013018
17759526 - 17782678
23153