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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_17780162_17780243_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17780162 - 17780243
Intron Length:
82

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAAGTTCA
5'SS Class:
major
3'SS Sequence:
CTGTGCTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACAAAC
U12 Branch Point Sequence:
GCCACGCAAACA
Flanking Amino Acid:
IKNFVRFQLSTSISALSLIT
Intron Amino Acid Position:
739

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1.3
77.7
33.5
Major BPS
50.8
0.02
0.9
57
25.1
Major PPT
79.2
0.66
0.9
72.8
37.5
Minor 5ss
41.9
-0.9
2.7
49.9
39.7
Minor BPS
37.4
-0.9
2.4
45.01
43.7

Associated Gene:

Gene:
ATP2C2
Ensembl Gene ID:
ENSAPLG00000012448
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013018
17759526 - 17782678
23153