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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_17786260_17787474_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17786260 - 17787474
Intron Length:
1215

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTGGTGAA
5'SS Class:
major
3'SS Sequence:
TTTTGCTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTATTTTATTT
Flanking Amino Acid:
AVGDLPESTETKGKKSILDV
Intron Amino Acid Position:
429

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1.2
69.7
36.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
89.7
0.89
0.7
84
31
Minor 5ss
27
-2.6
3.1
31.6
42.8
Minor BPS
61.8
0.45
1.6
79.69
37

Associated Gene:

Gene:
MEAK7
Ensembl Gene ID:
ENSAPLG00000012412
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012929
17785185 - 17796423
11239