Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_1779176_1779727_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1779176 - 1779727

Intron Length:

552

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGATCT

5'SS Class:

strong_major

3'SS Sequence:

CTTTTAACTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAC

U12 Branch Point Sequence:

TGCCTTTTAACT

Flanking Amino Acid:

RLFEIEPEQQRYAIFLPLHE

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

92.3

0.8

84.2

27.2

Major BPS

89.7

0.98

0.7

89.9

Major PPT

0.7

0.8

33.5

Minor 5ss

40.6

-1.1

3.1

57.4

46.8

Minor BPS

68.6

0.66

1.2

77.46

39.1

Associated Gene:

Gene:

POP4

Ensembl Gene ID:

ENSAPLG00000014051

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028856

1777763 - 1780385

2623

ENSAPLT00000014646

1777722 - 1780385

2664