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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_17792343_17795008_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17792343 - 17795008
Intron Length:
2666

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGCTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATTTTAAAAATA
Flanking Amino Acid:
KKTVTLGALQAYMREPLPEQ
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.7
1.01
0.9
74.6
38.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
82.3
0.73
0.8
77.5
31.3
Minor 5ss
19.4
-3.5
3.9
28.7
43.6
Minor BPS
45.7
-0.3
2
63.36
36.9

Associated Gene:

Gene:
MEAK7
Ensembl Gene ID:
ENSAPLG00000012412
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012929
17785185 - 17796423
11239