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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_178058_179653_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
178058 - 179653
Intron Length:
1596

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATAT
5'SS Class:
strong_major
3'SS Sequence:
TGTGTTCAATCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTAAT
U12 Branch Point Sequence:
CTTAATATAACA
Flanking Amino Acid:
AALIVAFRNLSGSNQVQEKA
Intron Amino Acid Position:
441

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
80.1
28.2
Major BPS
78.2
0.7
1
77.9
32.1
Major PPT
68.9
0.42
1.1
67.8
42.7
Minor 5ss
39
-1.2
3.2
55.7
48.5
Minor BPS
49.9
-0
1.8
66.02
40.1

Associated Gene:

Gene:
DPY19L3
Ensembl Gene ID:
ENSAPLG00000012920
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013474
162016 - 195127
33112
ENSAPLT00000032210
156791 - 195127
38337
ENSAPLT00000031327
162016 - 195127
33112
ENSAPLT00000024410
163632 - 195127
31496