Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_17822225_17823351_F

Intron Information:

Intron Rank:

128691

Intron Class:

minor-like

Intron Phase:

Intron Coordinates:

17822225 - 17823351

Intron Length:

1127

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGT|GTATGCTTT

5'SS Class:

weak_minor

3'SS Sequence:

GTTTTTGTGCTAG|G

3'SS Class:

minor_BPS

U2 Branch Point Sequence:

TTGTCAT

U12 Branch Point Sequence:

TTTTGCTTCATT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

62.7

0.3

1.2

64.4

42.3

Major BPS

84.8

0.86

1.1

85.7

34.9

Major PPT

70.9

0.47

1.1

65.8

45.3

Minor 5ss

77.5

0.92

82.4

37.2

Minor BPS

63.3

0.5

2.2

87.41

38.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000019272

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040189

17821167 - 17823814

2648