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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_17883753_17884611_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17883753 - 17884611
Intron Length:
859

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGACTT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTTGACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTCAA
U12 Branch Point Sequence:
TGTTTTTTGACA
Flanking Amino Acid:
YDPRCNQWIKVASMRQRRVD
Intron Amino Acid Position:
379

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
80.6
33.8
Major BPS
66.8
0.42
1.1
69.4
37.7
Major PPT
82.4
0.73
1
79.9
37.7
Minor 5ss
32.5
-2
3.3
47.4
48
Minor BPS
73.4
0.73
1.1
78.31
31.5

Associated Gene:

Gene:
KLHL36
Ensembl Gene ID:
ENSAPLG00000012341
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012846
17878266 - 17893550
15285