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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_17899321_17916713_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17899321 - 17916713
Intron Length:
17393

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTCA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTATTTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
AATCCTTTAACA
Flanking Amino Acid:
MALNSAQYIFGEFSPDE
Intron Amino Acid Position:
8

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
73.7
33.1
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
85.5
0.8
0.7
81.5
29.3
Minor 5ss
38.7
-1.3
2.9
47.9
47.8
Minor BPS
75
0.78
1.1
76.79
33.2

Associated Gene:

Gene:
USP10
Ensembl Gene ID:
ENSAPLG00000012121
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017372
17899300 - 17946067
46768