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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_17909322_17916713_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17909322 - 17916713
Intron Length:
7392

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGAATT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTATTTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
AATCCTTTAACA
Flanking Amino Acid:
QKSDAIPEFWYIFGEFSPDE
Intron Amino Acid Position:
13

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
0.9
80.6
33.8
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
85.5
0.8
0.7
81.5
29.3
Minor 5ss
33.5
-1.9
3.1
41.3
44.8
Minor BPS
75
0.78
1.1
76.79
33.2

Associated Gene:

Gene:
USP10
Ensembl Gene ID:
ENSAPLG00000012121
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012671
17909286 - 17948032
38747