About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_17916783_17919789_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17916783 - 17919789
Intron Length:
3007

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGATCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCATACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTGTTCTTAATG
Flanking Amino Acid:
FFVTPRCSVELPPYNETVTC
Intron Amino Acid Position:
36

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.2
27.2
Major BPS
100
1.24
0.5
100
0
Major PPT
89
0.88
0.8
85
28.8
Minor 5ss
40.6
-1.1
3.1
57.4
46.8
Minor BPS
76.5
0.69
1.2
74.52
38.4

Associated Gene:

Gene:
USP10
Ensembl Gene ID:
ENSAPLG00000012121
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037500
17914670 - 17948032
33363
ENSAPLT00000017372
17899300 - 17946067
46768
ENSAPLT00000012671
17909286 - 17948032
38747