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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_12_17931823_17933258_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17931823 - 17933258
Intron Length:
1436

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTCTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
TGTTACTTATAT
Flanking Amino Acid:
NMPVPPKAKQALGEKIVRDI
Intron Amino Acid Position:
474

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
72.2
39.5
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
82.1
0.72
0.8
77.3
31.5
Minor 5ss
26.6
-2.7
3
31.5
42.8
Minor BPS
58.4
0.34
1.9
79.55
41.7

Associated Gene:

Gene:
USP10
Ensembl Gene ID:
ENSAPLG00000012121
Chromosome:
12

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017372
17899300 - 17946067
46768
ENSAPLT00000012671
17909286 - 17948032
38747
ENSAPLT00000037500
17914670 - 17948032
33363